In Mega Man X Command Mission, Mega Man must infiltrate Giga City Island to thwart the evil plans of the Liberion Army who have initiated a riot on the isle. By choosing from a selection of seven different playable characters, gamers can construct a three-member attack force using Mega Man, Zero, Axl, or characters new to the Mega Man universe, to help bring peace to the region once and for all. It is up to gamers, to create a dream team of Mega Man’s allies and reploid friends to stop the destructive battle that has begun to wage itself on Giga City Island.

Mega Man X Command Mission features exciting action RPG-style combat and a revolutionary "Cross Order System" that allows flawless execution of special and finishing attack moves on enemies. Character building is a crucial aspect of the game. Super-energy metals called “Force Metals,” weapons, abilities, and attack moves can be upgraded, vastly improving the overall performance of characters.

1. The first RPG in the Mega Man universe – Mega Man X Command Mission features RPG-style combat and action elements to create a unique blue bomber experience.
2. An all-star cast – Mega Man will not be alone in his fight. Joining him will be Axl and Zero, as well as a cast of characters new to the Mega Man Universe.
3. New heroes join the Mega Man series, each with their own unique ability or weapon: Cinnamon has healing abilities, Marino specializes in ninja tactics, Masimo wields an ax, and Spider carries playing cards.
4. "Cross Order System" – This new system interface displays the turn order and health. With a little luck, gamers can steal the enemy’s energy and finish them with a deadly "final strike" attack combo.

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